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1

The first specimen of Deinotherium indicum (Mammalia, Proboscidea, Deinotheriidae) from the late Miocene of Kutch, India

Singh, Ningthoujam Premjit, Jukar, Advait M., Patnaik, Rajeev, Sharma, K. Milankumar, Singh, Nongmaithem Amardas, Singh, Yumlembam Priyananda

Journal:

Journal of Paleontology

Year:

2020

Language:

english

File:

PDF, 651 KB

english, 2020

2

Guest Editorial on the Special Issue on Informatics on Biomedical Data Learning, Reasoning, and Representation

Kahveci, Tamer, Pozzi, Giuseppe, Shehu, Amarda, Wang, May Dongmei

Journal:

IEEE Journal of Biomedical and Health Informatics

Year:

2019

Language:

english

File:

PDF, 191 KB

english, 2019

3

Effective Automated Feature Construction and Selection for Classification of Biological Sequences

Kamath, Uday, De Jong, Kenneth, Shehu, Amarda, de Brevern, Alexandre G.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

4

Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules

Olson, Brian, Hashmi, Irina, Molloy, Kevin, Shehu, Amarda

Journal:

Advances in Artificial Intelligence

Year:

2012

Language:

english

File:

PDF, 4.13 MB

english, 2012

5

Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations

Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 749 KB

english, 2006

6

Multiscale characterization of protein conformational ensembles

Amarda Shehu, Lydia E. Kavraki, Cecilia Clementi

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 898 KB

english, 2009

7

Sampling Conformation Space to Model Equilibrium Fluctuations in Proteins

Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki

Journal:

Year:

2007

Language:

english

File:

PDF, 1.76 MB

english, 2007

8

An Evolutionary Algorithm Approach for Feature Generation from Sequence Data and Its Application to DNA Splice Site Prediction

Kamath, Uday, Compton, Jack, Islamaj-Doğan, Rezarta, De Jong, Kenneth A., Shehu, Amarda

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 980 KB

english, 2012

9

Unfolding the fold of cyclic cysteine-rich peptides

Amarda Shehu, Lydia E. Kavraki, Cecilia Clementi

Journal:

Protein Science

Year:

2008

Language:

english

File:

PDF, 808 KB

english, 2008

10

Evolutionary-inspired probabilistic search for enhancing sampling of local minima in the protein energy surface

Olson, Brian S, Shehu, Amarda

Journal:

Proteome Science

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

11

[IEEE 2010 IEEE Congress on Evolutionary Computation (CEC) - Barcelona, Spain (2010.07.18-2010.07.23)] IEEE Congress on Evolutionary Computation - Using evolutionary computation to improve SVM classification

Kamath, Uday, Shehu, Amarda, De Jong, Kenneth

Year:

2010

Language:

english

File:

PDF, 774 KB

english, 2010

12

On the Characterization of Protein Native State Ensembles

Shehu, Amarda, Kavraki, Lydia E., Clementi, Cecilia

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 767 KB

english, 2007

13

Design and fabrication of a high T c BSCCO based square helmholtz coil

K, Nayak Pramoda, U, Prasad, A, Amardas, D, Patel, S, Pradhan

Journal:

Journal of Physics Conference Series

Year:

2010

Language:

english

File:

PDF, 599 KB

english, 2010

14

Probabilistic Search and Energy Guidance for Biased Decoy Sampling in Ab Initio Protein Structure Prediction

Molloy, Kevin, Saleh, Sameh, Shehu, Amarda

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 2.57 MB

english, 2013

15

Mapping the Protein Conformational Landscape with Adaptive Probabilistic Search

Olson, Brian, Shehu, Amarda

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

16

Exploring representations of protein structure for automated remote homology detection and mapping of protein structure space

Kevin Molloy,M Jennifer Van,Daniel Barbara,Amarda Shehu

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.89 MB

english, 2014

17

Elucidating the ensemble of functionally-relevant transitions in protein systems with a robotics-inspired method

Kevin Molloy,Amarda Shehu

Journal:

BMC Structural Biology

Year:

2013

Language:

english

File:

PDF, 1.93 MB

english, 2013

18

The 6th Computational Structural Bioinformatics Workshop

Jing He,Amarda Shehu,Nurit Haspel,Brian Chen

Journal:

BMC Structural Biology

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

19

A population-based evolutionary search approach to the multiple minima problem in de novo protein structure prediction

Sameh Saleh,Brian Olson,Amarda Shehu

Journal:

BMC Structural Biology

Year:

2013

Language:

english

File:

PDF, 3.42 MB

english, 2013

20

HopDock: a probabilistic search algorithm for decoy sampling in protein-protein docking

Irina Hashmi,Amarda Shehu

Journal:

Proteome Science

Year:

2013

Language:

english

File:

PDF, 663 KB

english, 2013

21

Rapid sampling of local minima in protein energy surface and effective reduction through a multi-objective filter

Brian S Olson,Amarda Shehu

Journal:

Proteome Science

Year:

2013

Language:

english

File:

PDF, 1.51 MB

english, 2013

22

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - An evolutionary framework to sample near-native protein conformations

Saleh, Sameh, Olson, Brian, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 131 KB

english, 2012

23

[IEEE 2011 IEEE Congress on Evolutionary Computation (CEC) - New Orleans, LA, USA (2011.06.5-2011.06.8)] 2011 IEEE Congress of Evolutionary Computation (CEC) - An evolutionary-based approach for feature generation: Eukaryotic promoter recognition

Kamath, Uday, De Jong, Kenneth A., Shehu, Amarda

Year:

2011

Language:

english

File:

PDF, 1.20 MB

english, 2011

24

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Atlanta, GA, USA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine - Populating Local Minima in the Protein Conformational Space

Olson, Brian, Shehu, Amarda

Year:

2011

Language:

english

File:

PDF, 140 KB

english, 2011

25

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - Physico-chemical features for recognition of antimicrobial peptides

Veltri, Daniel, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 137 KB

english, 2012

26

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - Binary Response Models for Recognition of Antimicrobial Peptides

Randou, Elena G., Veltri, Daniel, Shehu, Amarda

Year:

2007

Language:

english

File:

PDF, 3.76 MB

english, 2007

27

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Philadelphia, PA, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine - A basin hopping algorithm for protein-protein docking

Hashmi, Irina, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 702 KB

english, 2012

28

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - Protein-protein Docking Using Information from Native Interaction Interfaces

Hashmi, Irina, Shehu, Amarda

Year:

2007

Language:

english

File:

PDF, 278 KB

english, 2007

29

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - Jumping low, jumping high: Controlling hopping in the protein energy surface

Olson, Brian, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 285 KB

english, 2012

30

Superconducting Current Feeder System With Associated Test Results for SST-1 Tokamak

Tanna, V.L., Sarkar, B., Gupta, N.C., Amardas, A., Misra, R., Dhard, C.P., Jadhav, P.S., Rewatkar, P., Sonara, D., Saxena, Y.C.

Journal:

IEEE Transactions on Appiled Superconductivity

Year:

2004

Language:

english

File:

PDF, 196 KB

english, 2004

31

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - A population-based evolutionary algorithm for sampling minima in the protein energy surface

Saleh, Sameh, Olson, Brian, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 2.36 MB

english, 2012

32

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Higher-order representations of protein structure space

Molloy, Kevin, Van, M. Jennifer, Barbara, Daniel, Shehu, Amarda

Year:

2013

Language:

english

File:

PDF, 278 KB

english, 2013

33

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - Sampling low-energy protein-protein configurations with basin hopping

Hashmi, Irina, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 126 KB

english, 2012

34

Are nicotinic acetylcholine receptors coupled to G proteins?

Kabbani, Nadine, Nordman, Jacob C., Corgiat, Brian A., Veltri, Daniel P., Shehu, Amarda, Seymour, Victoria A., Adams, David J.

Journal:

Year:

2013

Language:

english

File:

PDF, 888 KB

english, 2013

35

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - A robotics-inspired method to sample conformational paths connecting known functionally-relevant structures in protein systems

Molloy, Kevin, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 1.58 MB

english, 2012

36

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Systematic analysis of global features and model building for recognition of antimicrobial peptides

Randou, Elena G., Veltri, Daniel, Shehu, Amarda

Year:

2013

Language:

english

File:

PDF, 1.19 MB

english, 2013

37

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - Mapping conformational pathways between known functional protein states

Molloy, Kevin, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 137 KB

english, 2012

38

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - A tree-based search to bias sampling of protein decoy conformations

Molloy, Kevin, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 132 KB

english, 2012

39

THE 5TH INTERNATIONAL CONFERENCE ON BIO-INSPIRED MODELS OF NETWORK, INFORMATION AND COMPUTING SYSTEMS (BIONETICS 2010) SPECIAL TRACK ON BIOINFORMATICS

HASPEL, NURIT, SHEHU, AMARDA

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2011

Language:

english

File:

PDF, 113 KB

english, 2011

40

Measurement of spatial and temporal behavior of Hα emission from Aditya tokamak using a diagnostic based on a photomultiplier tube arraya)

Chowdhuri, M. B., Ghosh, J., Manchanda, R., Kumar, Ajay, Banerjee, S., Ramaiya, N., Virani, Niral, Mali, Aniruddh, Amardas, A., Kumar, Pintu, Tanna, R. L., Gupta, C. N., Bhatt, S. B., Chattopadhyay, P

Journal:

Review of Scientific Instruments

Year:

2014

Language:

english

File:

PDF, 708 KB

english, 2014

41

[ACM Press Proceeding of the fifteenth annual conference - Amsterdam, The Netherlands (2013.07.06-2013.07.10)] Proceeding of the fifteenth annual conference on Genetic and evolutionary computation conference - GECCO '13 - Off-lattice protein structure prediction with homologous crossover

Olson, Brian, De Jong, Kenneth, Shehu, Amarda

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

42

[IEEE 2014 International Symposium on Discharges and Electrical Insulation in Vacuum (ISDEIV) - Mumbai, India (2014.9.28-2014.10.3)] 2014 International Symposium on Discharges and Electrical Insulation in Vacuum (ISDEIV) - Electrical design analysis and breakdown voltage test aspects of indigenously developed electrical breaks at cryo temperatures

Sharma, Rajiv, Tanna, V. L., Amardas, A., Pradhan, S., Chandramouli, S.

Year:

2014

Language:

english

File:

PDF, 914 KB

english, 2014

43

IN SEARCH OF THE PROTEIN NATIVE STATE WITH A PROBABILISTIC SAMPLING APPROACH

OLSON, BRIAN, MOLLOY, KEVIN, SHEHU, AMARDA

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2011

Language:

english

File:

PDF, 1.14 MB

english, 2011

44

AN EVOLUTIONARY CONSERVATION-BASED METHOD FOR REFINING AND RERANKING PROTEIN COMPLEX STRUCTURES

AKBAL-DELIBAS, BAHAR, HASHMI, IRINA, SHEHU, AMARDA, HASPEL, NURIT

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2012

Language:

english

File:

PDF, 2.59 MB

english, 2012

45

Fatal aluminum phosphide poisonings in Tirana (Albania), 2009 – 2013

Sulaj, Zihni, Drishti, Alert, Çeko, Irena, Gashi, Amarda, Vyshka, Gentian

Journal:

DARU Journal of Pharmaceutical Sciences

Year:

2015

Language:

english

File:

PDF, 980 KB

english, 2015

46

GUIDING PROBABILISTIC SEARCH OF THE PROTEIN CONFORMATIONAL SPACE WITH STRUCTURAL PROFILES

OLSON, BRIAN, MOLLOY, KEVIN, HENDI, S. FARID, SHEHU, AMARDA

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2012

Language:

english

File:

PDF, 346 KB

english, 2012

47

[IEEE 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Belfast, United Kingdom (2014.11.2-2014.11.5)] 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Sampling-based methods for a full characterization of energy landscapes of small peptides

Devaurs, Didier, Shehu, Amarda, Simeon, Thierry, Cortes, Juan

Year:

2014

Language:

english

File:

PDF, 2.14 MB

english, 2014

48

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - Informatics-driven Protein-protein Docking

Hashmi, Irina, Shehu, Amarda

Year:

2007

Language:

english

File:

PDF, 1.07 MB

english, 2007

49

[ACM Press the 2014 conference companion - Vancouver, BC, Canada (2014.07.12-2014.07.16)] Proceedings of the 2014 conference companion on Genetic and evolutionary computation companion - GECCO Comp '14 - Evolutionary search algorithms for protein modeling

Shehu, Amarda, De Jong, Kenneth A.

Year:

2014

Language:

english

File:

PDF, 2.64 MB

english, 2014

50

A TWO-STAGE EVOLUTIONARY APPROACH FOR EFFECTIVE CLASSIFICATION OF HYPERSENSITIVE DNA SEQUENCES

KAMATH, UDAY, SHEHU, AMARDA, DE JONG, KENNETH A.

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2011

Language:

english

File:

PDF, 464 KB

english, 2011

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